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proclat  (MathWorks Inc)


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    Structured Review

    MathWorks Inc proclat
    Features of the <t> ProClaT </t> pattern recognition model
    Proclat, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/proclat/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    proclat - by Bioz Stars, 2026-04
    90/100 stars

    Images

    1) Product Images from "ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense"

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    Journal: BMC Bioinformatics

    doi: 10.1186/s12859-016-1338-5

    Features of the ProClaT pattern recognition model
    Figure Legend Snippet: Features of the ProClaT pattern recognition model

    Techniques Used: Sequencing, Functional Assay

    Flowchart representing the algorithm to develop ProClaT. In the first step, the domain conserved protein and the consensus region are generated. In the second step, a search is performed in NCBI NR with the generated region consensus as query. With the list of similar proteins, the features are extracted and the classifier is trained and tested
    Figure Legend Snippet: Flowchart representing the algorithm to develop ProClaT. In the first step, the domain conserved protein and the consensus region are generated. In the second step, a search is performed in NCBI NR with the generated region consensus as query. With the list of similar proteins, the features are extracted and the classifier is trained and tested

    Techniques Used: Generated

    Original annotation of all complete genome NifO-like proteins. Of the 82 proteins classified as NifO-like with ProClaT, most correspond to nitrogenase-associated protein. The proteins annotated as arsenate reductase, hypothetical and others, totaling 21 proteins, might be re-classified as NifO-like, also
    Figure Legend Snippet: Original annotation of all complete genome NifO-like proteins. Of the 82 proteins classified as NifO-like with ProClaT, most correspond to nitrogenase-associated protein. The proteins annotated as arsenate reductase, hypothetical and others, totaling 21 proteins, might be re-classified as NifO-like, also

    Techniques Used:

    Bacterial species containing gene coding for NifO-like and for Nif proteins. ProClaT identified 56 bacterial species containing genes coding for nifO-like. All belong to a genome containing at least three genes coding for an essential Nif protein. Fifty-three species contain at least 4 nif genes, 49 contain at least 5 nif genes and 42 contain all the six essential nif genes
    Figure Legend Snippet: Bacterial species containing gene coding for NifO-like and for Nif proteins. ProClaT identified 56 bacterial species containing genes coding for nifO-like. All belong to a genome containing at least three genes coding for an essential Nif protein. Fifty-three species contain at least 4 nif genes, 49 contain at least 5 nif genes and 42 contain all the six essential nif genes

    Techniques Used:

    Sensitivity and specificity of protein prediction methods
    Figure Legend Snippet: Sensitivity and specificity of protein prediction methods

    Techniques Used:

    NifHDKENB proteins identification by ProClaT
    Figure Legend Snippet: NifHDKENB proteins identification by ProClaT

    Techniques Used:



    Similar Products

    proclat  (MathWorks Inc)
    90
    MathWorks Inc proclat
    Features of the <t> ProClaT </t> pattern recognition model
    Proclat, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/proclat/product/MathWorks Inc
    Average 90 stars, based on 1 article reviews
    proclat - by Bioz Stars, 2026-04
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Features of the ProClaT pattern recognition model

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: Features of the ProClaT pattern recognition model

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques: Sequencing, Functional Assay

    Flowchart representing the algorithm to develop ProClaT. In the first step, the domain conserved protein and the consensus region are generated. In the second step, a search is performed in NCBI NR with the generated region consensus as query. With the list of similar proteins, the features are extracted and the classifier is trained and tested

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: Flowchart representing the algorithm to develop ProClaT. In the first step, the domain conserved protein and the consensus region are generated. In the second step, a search is performed in NCBI NR with the generated region consensus as query. With the list of similar proteins, the features are extracted and the classifier is trained and tested

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques: Generated

    Original annotation of all complete genome NifO-like proteins. Of the 82 proteins classified as NifO-like with ProClaT, most correspond to nitrogenase-associated protein. The proteins annotated as arsenate reductase, hypothetical and others, totaling 21 proteins, might be re-classified as NifO-like, also

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: Original annotation of all complete genome NifO-like proteins. Of the 82 proteins classified as NifO-like with ProClaT, most correspond to nitrogenase-associated protein. The proteins annotated as arsenate reductase, hypothetical and others, totaling 21 proteins, might be re-classified as NifO-like, also

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques:

    Bacterial species containing gene coding for NifO-like and for Nif proteins. ProClaT identified 56 bacterial species containing genes coding for nifO-like. All belong to a genome containing at least three genes coding for an essential Nif protein. Fifty-three species contain at least 4 nif genes, 49 contain at least 5 nif genes and 42 contain all the six essential nif genes

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: Bacterial species containing gene coding for NifO-like and for Nif proteins. ProClaT identified 56 bacterial species containing genes coding for nifO-like. All belong to a genome containing at least three genes coding for an essential Nif protein. Fifty-three species contain at least 4 nif genes, 49 contain at least 5 nif genes and 42 contain all the six essential nif genes

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques:

    Sensitivity and specificity of protein prediction methods

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: Sensitivity and specificity of protein prediction methods

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques:

    NifHDKENB proteins identification by ProClaT

    Journal: BMC Bioinformatics

    Article Title: ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense

    doi: 10.1186/s12859-016-1338-5

    Figure Lengend Snippet: NifHDKENB proteins identification by ProClaT

    Article Snippet: As shown in Table , ProClaT was developed in the programming language Matlab ®, which also worked as Integrated Development Environment (IDE), using the Bioinformatics ToolboxTM.

    Techniques: